PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G27180.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ARF

Protein Properties

Length: 735aa MW: 79147.3 Da PI: 7.1332

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G27180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.5e-23	174	275	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + ONIVA02G27180.1 174 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 263 89***************************96555555..8********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ ONIVA02G27180.1 264 DGGDLHVGIRRA 275 88999***97 PP
2	Auxin_resp	116.9	1.7e-38	325	408	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+ ONIVA02G27180.1 325 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPQSPWRLLQ 408 6788999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MLPWERQPKA ATTNLSSSPP LPPPHDEHSH GHTTTPARSV AGAAGCGGGG GCVAMITFAD 60 LAEPAPGAER CVDRQLWLAC AGGMCTVPPV GAAVYYFPQG HAEHALGLAA PELSAARVPA 120 LVPCRVASVR YMADPDTDEV FARIRLVPLR AAEDGDVEED GAAAGEEHEK PASFAKTLTQ 180 SDANNGGGFS VPRYCAETIF PRLDYAADPP VQTVVAKDVH GVAWNFRHIY RGTPRRHLLT 240 TGWSTFVNQK KLVAGDSIVF LRGDGGDLHV GIRRAKRGFC GGGGGAEEAS LPGWDQYGGL 300 MRGNASPCAA AKGRGKVRAE DVVEAARLAS GGQPFEVVYY PRASTPEFCV RAAAVRAAMR 360 VQWCPGMRFK MAFETEDSSR ISWFMGTVAS VQVADPIRWP QSPWRLLQVT WDEPDLLQNV 420 KRVSPWLVEL VSSMPAIHLS SFSPPRKKPR IPAYPEFPFE GQLLNPAFPP NPLAHGHHHY 480 HHNHPSFFPF PDVSAPAGIQ GARHAQFGPS LSDLHLTHLQ SSLMYPGLRR PDHVGPTSIP 540 PPRISTDLTM GSSPPARALS MGAKKPDDAK PPGLMLFGQR ILTERQMSLS GTTSPAATGN 600 SSLNWNTEKG ASEGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG QCKVFIESDT 660 VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE PFSEFIKLAR 720 RLTILTDAGS DNLGS

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MLPWERQPKA ATTNLSSSPP LPPPHDEHSH GHTTTPARSV AGAAGCGGGG GCVAMITFAD  60
LAEPAPGAER CVDRQLWLAC AGGMCTVPPV GAAVYYFPQG HAEHALGLAA PELSAARVPA  120
LVPCRVASVR YMADPDTDEV FARIRLVPLR AAEDGDVEED GAAAGEEHEK PASFAKTLTQ  180
SDANNGGGFS VPRYCAETIF PRLDYAADPP VQTVVAKDVH GVAWNFRHIY RGTPRRHLLT  240
TGWSTFVNQK KLVAGDSIVF LRGDGGDLHV GIRRAKRGFC GGGGGAEEAS LPGWDQYGGL  300
MRGNASPCAA AKGRGKVRAE DVVEAARLAS GGQPFEVVYY PRASTPEFCV RAAAVRAAMR  360
VQWCPGMRFK MAFETEDSSR ISWFMGTVAS VQVADPIRWP QSPWRLLQVT WDEPDLLQNV  420
KRVSPWLVEL VSSMPAIHLS SFSPPRKKPR IPAYPEFPFE GQLLNPAFPP NPLAHGHHHY  480
HHNHPSFFPF PDVSAPAGIQ GARHAQFGPS LSDLHLTHLQ SSLMYPGLRR PDHVGPTSIP  540
PPRISTDLTM GSSPPARALS MGAKKPDDAK PPGLMLFGQR ILTERQMSLS GTTSPAATGN  600
SSLNWNTEKG ASEGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG QCKVFIESDT  660
VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE PFSEFIKLAR  720
RLTILTDAGS DNLGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G27180.1