PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G26540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 332aa MW: 34936.9 Da PI: 4.9272

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G26540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.3	1.6e-08	30	67	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ ++ + ++l+C+ ++ +lC+ C H g H ONIVA02G26540.1 30 RACDSCGGEAARLYCRADGAFLCARCDARAH-GagsrHA 67 57**************************999.4466675 PP
2	zf-B_box	22.9	1.8e-07	69	113	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p ONIVA02G26540.1 69 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 113 679*****************************6688888898877 PP
3	CCT	70.4	4.5e-24	261	304	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++ ONIVA02G26540.1 261 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 304 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MEAVEDKAMV GVGGAVAAGY SSSSWGLGTR ACDSCGGEAA RLYCRADGAF LCARCDARAH 60 GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGP 120 LADAPQPFPF SQAAADAAAA REEDADDDRS NEAEAASWLL PEPDDNSHED SAAAADAFFA 180 DTGAYLGVDL DFARSMDGIK AIGVPVAPPE LDLTAGSLFY PEHSMAHSLS SSEVAIVPDA 240 LSAGAAAPPM VVVVASKGKE REARLMRYRE KRKNRRFDKT IRYASRKAYA ETRPRIKGRF 300 AKRTADADDD DEAPCSPAFS ALAASDGVVP SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	5e-42	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G26540.1