PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G22870.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 442aa MW: 47771.6 Da PI: 9.6365

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G22870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	327	349	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F ++ L H++ H ONIVA02G22870.1 327 FSCCYCPKRFQSSQALGGHQNAH 349 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MRPAAPARHP SAAASSSSST NSQQEPRPEN PLLLLPSSRA GKLSLGCPVL DRLLSGGLPP 60 ASVTEIAGES ASGKTQLCLQ LALLAPLSPL SASCLFLHSD LPFPLRRLRG LAPKSRPDLL 120 DHVLVAAAHS PSDLISLLSR AQRLLAHPGR LPPVRLILVD SIASLFRADF DASPADLKRR 180 SALFFRISAK LKELAHRHRC VVVVTNQVVD VVEGEAGNTV AWSSGRRVSP ALGIAWANCV 240 NTRLFLTRDA DGRGCARRRM NVAFAPHLPE RACEFVIRRD GVFGVEPSGR VCYNSAPEFM 300 GEQMDNEELN LSLSLQPSYP SRFQTEFSCC YCPKRFQSSQ ALGGHQNAHK LQRNLAKRNR 360 EAFLSISQRK GANAGIKDGS SALSAESISK ISSGKKHHKE AWQVMQGSCG SSSSGTVMHK 420 SIEQDVEDED LSNGTIDLSL KL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MRPAAPARHP SAAASSSSST NSQQEPRPEN PLLLLPSSRA GKLSLGCPVL DRLLSGGLPP  60
ASVTEIAGES ASGKTQLCLQ LALLAPLSPL SASCLFLHSD LPFPLRRLRG LAPKSRPDLL  120
DHVLVAAAHS PSDLISLLSR AQRLLAHPGR LPPVRLILVD SIASLFRADF DASPADLKRR  180
SALFFRISAK LKELAHRHRC VVVVTNQVVD VVEGEAGNTV AWSSGRRVSP ALGIAWANCV  240
NTRLFLTRDA DGRGCARRRM NVAFAPHLPE RACEFVIRRD GVFGVEPSGR VCYNSAPEFM  300
GEQMDNEELN LSLSLQPSYP SRFQTEFSCC YCPKRFQSSQ ALGGHQNAHK LQRNLAKRNR  360
EAFLSISQRK GANAGIKDGS SALSAESISK ISSGKKHHKE AWQVMQGSCG SSSSGTVMHK  420
SIEQDVEDED LSNGTIDLSL KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-13	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G22870.1