PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G20290.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 492aa MW: 54476.9 Da PI: 7.4446

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G20290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H ONIVA02G20290.1 66 YICEVCHKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	10.9	0.0014	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H + + ONIVA02G20290.1 142 WKCDRCSKKYAVQSDWKAHTKIC 164 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MSHTSEEESL NNLQQQPKLE ACAAGSSKGD TVMPVVKKRR GHPGNPDPDV EVVALSPKTL 60 LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EITCPHHDAT 120 RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK 180 DSFITHRAFC DALAEDTCRV NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLASN 240 DHNSDSHLRS LSPYALVTRN TALFSNQISP KESGFPLDGS VTSYPYMSMN SPYMSATALL 300 QKAAEMGAKT SQDPISPLLL KSFPNNLTSS RDHMNISSRS QGDSLGNSTV NSDCMKTTED 360 ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR EEKDNPSIFP ENQTQHNRQD 420 NISGVVDANA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL 480 DPTALEKPIW DS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MSHTSEEESL NNLQQQPKLE ACAAGSSKGD TVMPVVKKRR GHPGNPDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EITCPHHDAT  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDTCRV NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLASN  240
DHNSDSHLRS LSPYALVTRN TALFSNQISP KESGFPLDGS VTSYPYMSMN SPYMSATALL  300
QKAAEMGAKT SQDPISPLLL KSFPNNLTSS RDHMNISSRS QGDSLGNSTV NSDCMKTTED  360
ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR EEKDNPSIFP ENQTQHNRQD  420
NISGVVDANA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL  480
DPTALEKPIW DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G20290.1