PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G19000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 100aa MW: 10887.6 Da PI: 10.5932 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 76.6 | 4.5e-24 | 3 | 99 | 277 | 374 |
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++s+ ++k+Er++++++i+++v ++ +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +L sv ONIVA02G19000.1 3 TDSDVAAKIERFWVQPKIQECVRAAVGV-GGDKTAASAWRATLVSAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRGELASV 95 6789999***************988776.6888899********************************************************** PP GRAS 371 SaWr 374 SaWr ONIVA02G19000.1 96 SAWR 99 ***8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence |
MGTDSDVAAK IERFWVQPKI QECVRAAVGV GGDKTAASAW RATLVSAGFV PVQVSSMAEA 60 QAESLLKKLP VRGFRLERRA GSLFLHWQRG ELASVSAWRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45160.1 | 5e-24 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA02G19000.1 |