PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G14470.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 326aa    MW: 35742.4 Da    PI: 7.1876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G14470.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12188213126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  ONIVA02G14470.1 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
                      67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MADGGGGGEA GSGGSAPVCS FVRKPPKNIR KRPTAPAVSD DDDEDGSGAI AAARAKKAPS  60
STSKLFFSSA DGSSEPRRFQ YESSRTIQAS TDSRATATLE TETEFDRDAR AIRERQLKQA  120
EESLKKNPSA PASGSGSGSG EVYKGIHGYT DYKAGFRREH TVSSEKAGGS HGPLRASAHI  180
RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQIEKEWEEA EKARKRRIAM  240
GGDGSDDEAG EEDDDDDEEA LPFACYICRE PFVDPVVTKC KHYFCEHCAL KHHSKNKKCF  300
VCNKPTLGIF NAAQEIRKKM AQDKKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-123C3H family protein