PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G08940.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 320aa    MW: 34565.5 Da    PI: 9.0098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G08940.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06163182120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  nL+ H+
  ONIVA02G08940.1 163 FSCPVCRKTFNRYNNLQMHM 182
                      89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MEDYAQTNLI SRGHGHHHQP ELMKEFPFLS LISSTSSCIS SSGQQQQQQQ DDDGHGGHDR  60
HQLLRYGCCS GNKQQEEEEE EVTVALRIGL PAVSSASPSP SPAMANHGAS ASSTGVAGDD  120
GGGGAMTGVG VEVESVRRSG GGGGGGQYWI PTAAQILAGA TQFSCPVCRK TFNRYNNLQM  180
HMWGHGSQYR RGGTAALRGA QPTAMLRLPC YCCAAGCRNH IDHPRARPLK DFRTLQTHYR  240
RRHGARDFAC RRCAKRFAVR GDWRTHEKNC GRLWRCACGA HFRHKRSLND HARAFGAAHA  300
HAGAGAEDDG RAAAAAGVLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.14e-83C2H2 family protein