PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G08800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 300aa    MW: 31153.4 Da    PI: 10.1391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G08800.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08101126227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +     Ck Gd+C+FaHg+
  ONIVA02G08800.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126
                      8***********************96 PP

2zf-CCCH34.82.8e-11266291127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  ONIVA02G08800.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291
                      69*********.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MEVGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF  60
PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC  120
HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS  180
LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS  240
IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-49C3H family protein