PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G08800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31153.4 Da PI: 10.1391 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.3e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ ONIVA02G08800.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126 8***********************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.8e-11 | 266 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ ONIVA02G08800.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MEVGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF 60 PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC 120 HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS 180 LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS 240 IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-49 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA02G08800.1 |