PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G05710.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 22681.7 Da    PI: 7.0536
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G05710.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.5e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s
  ONIVA02G05710.2  9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59
                     79***********************************************96 PP
2K-box17.91.3e-076211746100
            K-box  46 LslkeLqqLeqqLeks.lkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +sl+eL +  q + +   ++i   +++ll +q+++l++ke+ l+++n  L ++++e
  ONIVA02G05710.2  62 CSLRELIEHYQTVTNThFEEINHDQHQLLNQQLDNLRRKEHILEDQNSFLCRMINE 117
                      78888877777776553799******************************998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP  60
TCSLRELIEH YQTVTNTHFE EINHDQHQLL NQQLDNLRRK EHILEDQNSF LCRMINENHH  120
QAAVGGGDVK AMVEMAPVLS MLTAAPAYYG EESSSTALQL TPPLHAVDAA AAAGFRLQPT  180
QPNLQDPGCS SSSFHAAAAG HGLQLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-32MIKC_MADS family protein