PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G05150.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 908aa    MW: 100837 Da    PI: 6.1606
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G05150.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24134235199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  ONIVA02G05150.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 223
                      99*****************************86555544..8************************************************..78 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  ONIVA02G05150.1 224 DSNQLLLGIRRA 235
                      78889***9997 PP
2Auxin_resp119.62.4e-39260343183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW nS+Wrs+k
  ONIVA02G05150.1 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWMNSHWRSVK 343
                      79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    
MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWMNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLMWLRDSQ NTGFQSLNFG  420
GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AALQNTTKQV SPAMLQFQQP QNIVGRSSLL  480
SSQILQQAQP QFQQMYHQNI NGNSIQGHSQ PEYLQQPLQH CQSFNEQKPQ LQPQQQQQES  540
HQQQPQHQQM QQQKHLSNFQ TVPNALSVFS QLSSTPQSTP STLQTVSPFS QQHNFPDTNI  600
SCLSPSNVSS MHDTLRSFPS EAASDLPGVP RITPVPVSDP WSSKRVAVES TITSRPHDIS  660
SQIENFDLTP SSIPQNSTLA PLPGRECLVD QDGSSDPQNH FLFGVNIDSQ SLLMQDGIPS  720
LHNENSSSTI PYSTSNFLSP SQDDYPLSQT LTTPGCLDES GYVPCSDNAD QVKRPPATFV  780
KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV DREDDVLLVG  840
DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSTRRL GNSCDNYMSR QESRSLSTGI  900
ASVGSVEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein