PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G00370.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 482aa MW: 53478.5 Da PI: 8.0605

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G00370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.2	1.9e-27	50	99	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s ONIVA02G00370.1 50 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 99 8***********************************************86 PP
2	K-box	73.3	7.1e-25	118	213	4	99
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ss + ee+ ++++ e++ L k+ie ++ + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + ONIVA02G00370.1 118 SSAHEGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQ 211 44444788899*********************************************************************************98 PP K-box 98 le 99 + ONIVA02G00370.1 212 CK 213 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MAAAAAGMGG GGGVQQQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT 60 FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA 120 HEGEESCVQK WRSEATTLGK KIEAIEGYKS KLLGEGLGSC SVQELQELEV QLEKSLCSIR 180 QKKQKMLMDQ ILELREKEMN LLKENMVLRD QCKALSSPWS TSVGELKNKQ ADDDVHRHED 240 YSGGGVRDDD DRRMMEDVET DLAAANQAGK VLKKGKKKQA KDELDRQKQA EKKRRRLEKA 300 LANSAAIISE LEKKKQKKRE EQQRLDEEGA AIAEAVALHV LIGEDSDEPC HLMLNKHRRC 360 NHWDHSAGFD FAVDAQGADI YPPDGLIQCA DHVYAPKGRC IDWGIGQPLP SWGEVKDLQL 420 QAPCYQGMFH QSVACPGFIA AQAVSSLQIG GDSSDITSPS QGATVVNRML GATNRLNLYR 480 EI

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MAAAAAGMGG GGGVQQQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT  60
FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA  120
HEGEESCVQK WRSEATTLGK KIEAIEGYKS KLLGEGLGSC SVQELQELEV QLEKSLCSIR  180
QKKQKMLMDQ ILELREKEMN LLKENMVLRD QCKALSSPWS TSVGELKNKQ ADDDVHRHED  240
YSGGGVRDDD DRRMMEDVET DLAAANQAGK VLKKGKKKQA KDELDRQKQA EKKRRRLEKA  300
LANSAAIISE LEKKKQKKRE EQQRLDEEGA AIAEAVALHV LIGEDSDEPC HLMLNKHRRC  360
NHWDHSAGFD FAVDAQGADI YPPDGLIQCA DHVYAPKGRC IDWGIGQPLP SWGEVKDLQL  420
QAPCYQGMFH QSVACPGFIA AQAVSSLQIG GDSSDITSPS QGATVVNRML GATNRLNLYR  480
EI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	318	KKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKK
2	276	296	KKKQAKDELDRQKQAEKKRRR
3	292	318	KKRRRLEKALANSAAIISELEKKKQKK
4	293	319	KKRRRLEKALANSAAIISELEKKKQKK
5	293	297	KRRRL
6	294	317	RRRLEKALANSAAIISELEKKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	3e-47	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G00370.1