PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G00110.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 127aa MW: 13999.7 Da PI: 10.3063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G00110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.2e-05	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H ONIVA02G00110.1 29 YPCGFCRREFRSAQALGGHMNVH 51 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence
MNNSSGSSRR EEAWRQQQLI LQAKKARSYP CGFCRREFRS AQALGGHMNV HRRDRARLRL 60 THQPDAALIA SPSTKSTPPL LPNLNYPPPP PHDGASSSSP PHLPRPPADA DADADAGLDL 120 ELRLAFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	6e-17	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G00110.1