PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G52000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 22888.3 Da PI: 10.5546 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.3 | 1.5e-21 | 24 | 71 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y + ONIVA01G52000.1 24 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 71 8*******************************************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MAMQVAAPSR RRPSLGRQKI EIRRIESEEA RQVCFSKRRA GFFKKASELS ILCSADVAAV 60 VFSPAGKAYS FGHPSVECLL ERFLPDSSSG AAARVRRGAN NNGGGGMVGE LNRQYGELRA 120 MVEAHKARQE RADEKIEMER AAGRWLPMDA DVRRMSPEEL MAFGTGLMAV QAAVSARADQ 180 MLRDALLIGR RPPTTTTAGF GFFHMPHY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-26 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G52000.1 |