PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G49060.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 476aa MW: 50159.3 Da PI: 8.1899

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G49060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H ONIVA01G49060.1 81 FVCEICGKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	10.6	0.0018	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC Cgk++ +s+ k H +++ ONIVA01G49060.1 164 WKCDRCGKRYAVHSDWKAHSKVC 186 58*****************9877 PP
3	zf-C2H2	12.5	0.00046	194	212	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + ONIVA01G49060.1 194 DCGTVFSRRDSFVTHRAFC 212 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEEFELQQQP YYSKLLLGSP LEIANVDDSH LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT 60 PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRGGAGGGGG 120 GEPPRKRVYV CPEASCVHHS PSRALGDLTG IKKHFCRKHG EKKWKCDRCG KRYAVHSDWK 180 AHSKVCGTRE YKCDCGTVFS RRDSFVTHRA FCDALAQENN KLAQPMNMAA VTSALQGQQQ 240 AHHPVADDDD AAGVKSPHLK MFPDVDKIVA AATAGNPLLP PPLSMAGCML SSLAAPLSSP 300 FLPGCKLGVD AARDAAMVFP PPPPPAGSAA AIMSATALLQ KAAELGATTS TGCYGGVAFP 360 AMGISGGLDR LPAIGHHLAP YDDVVVPAAL QGQTATQLVG FDLGGLLPGQ LYGGGGGAMT 420 RAIGSLMHGG DQHAGVVDRR RGEGVRVVDY MGVDDDDDHG CFDGVGPFGP HIGPWA

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEEFELQQQP YYSKLLLGSP LEIANVDDSH LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT  60
PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRGGAGGGGG  120
GEPPRKRVYV CPEASCVHHS PSRALGDLTG IKKHFCRKHG EKKWKCDRCG KRYAVHSDWK  180
AHSKVCGTRE YKCDCGTVFS RRDSFVTHRA FCDALAQENN KLAQPMNMAA VTSALQGQQQ  240
AHHPVADDDD AAGVKSPHLK MFPDVDKIVA AATAGNPLLP PPLSMAGCML SSLAAPLSSP  300
FLPGCKLGVD AARDAAMVFP PPPPPAGSAA AIMSATALLQ KAAELGATTS TGCYGGVAFP  360
AMGISGGLDR LPAIGHHLAP YDDVVVPAAL QGQTATQLVG FDLGGLLPGQ LYGGGGGAMT  420
RAIGSLMHGG DQHAGVVDRR RGEGVRVVDY MGVDDDDDHG CFDGVGPFGP HIGPWA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G49060.1