PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G46980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 440aa    MW: 47923.3 Da    PI: 8.6646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G46980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-1082107227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C +++rtG C++G +C+F+H++
  ONIVA01G46980.1  82 GEPDCTYYLRTGLCRFGMSCRFNHPQ 107
                      6899********************97 PP

2zf-CCCH38.91.4e-12127152227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++CkF+H++
  ONIVA01G46980.1 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152
                      5799********************96 PP

3zf-CCCH37.15.1e-12174198327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tG+CkyG++CkF+H++
  ONIVA01G46980.1 174 EKECAYYLKTGQCKYGNTCKFHHPE 198
                      679********************96 PP

4zf-CCCH39.31.1e-12335360227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG Ck+G+ CkF+H++
  ONIVA01G46980.1 335 DQPECQYYMKTGDCKFGAVCKFHHPR 360
                      689*********************96 PP

5zf-CCCH41.81.8e-13380405126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++elC+f++r+G+Ck+G++CkF H+
  ONIVA01G46980.1 380 PGEELCKFYSRYGICKFGANCKFDHP 405
                      689**********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM  60
WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG  120
EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY  180
LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPSYTGTM ASWAFPRGSF  240
IPSPRWQNPS NYAPMIVPQG LVQVPSWNSY TGQMMPVSSS ESRLQSPGAQ QTYGTSQQVD  300
ASAGNQGMLS PYRSSSYPVP QYALQRENVF PERPDQPECQ YYMKTGDCKF GAVCKFHHPR  360
VRSMPTPDCV LSPVGLPLRP GEELCKFYSR YGICKFGANC KFDHPTMAPP MGVYAYGSAS  420
TNVPMVRRLL QSPSASAYTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147C3H family protein