PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G46270.3
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 293aa    MW: 31988.9 Da    PI: 4.5183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G46270.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011266289123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+k+F++++ L+ H +  H
  ONIVA01G46270.3 266 YACKPCNKTFNTSMGLEAHSKAkH 289
                      78999**************88777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFGEV DGKRILLGTL  60
SVEHRDESDE EVPLAIPLFP NSDDDKIKEV QNSPSKFATL KSAAAASPTP EAIVEERKNY  120
GKSEADDDDS DEESDASGED EYDDEEDMID KQDSSDDDGD SSDEEETPSK NTKGTNRHVE  180
TPLNTPPQKR ARLATPIMDS KAGTGKRSGY VHVATPYPAK QAKKTPVNND MAKQSSGYVH  240
VATPYPAKQA KKRTANNDMS EHSAGYACKP CNKTFNTSMG LEAHSKAKHT ATK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.14e-11C2H2 family protein