PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G46270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 321aa MW: 35021.3 Da PI: 4.3787 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 294 | 317 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F++++ L+ H + H ONIVA01G46270.1 294 YACKPCNKTFNTSMGLEAHSKAkH 317 78999**************88777 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence |
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFGEV DGKRILLGTL 60 SVEHRPQLSI DLEFFSLTFC LAVCTSDSPT EEGDESDEEV PLAIPLFPNS DDDKIKEVQN 120 SPSKFATLKS AAAASPTPEA IVEERKNYGK SEADDDDSDE ESDASGEDEY DDEEDMIDKQ 180 DSSDDDGDSS DEEETPSKNT KGTNRHVETP LNTPPQKRAR LATPIMDSKA GTGKRSGYVH 240 VATPYPAKQA KKTPVNNDMA KQSSGYVHVA TPYPAKQAKK RTANNDMSEH SAGYACKPCN 300 KTFNTSMGLE AHSKAKHTAT K |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 5e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G46270.1 |