PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G46080.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 483aa MW: 52822.3 Da PI: 6.9421

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G46080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32	1.6e-10	123	175	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50 k ien+ +r+ tf +Rr g+ K + +LC++e+++i +++ g++ +++ ONIVA01G46080.1 123 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICVAPAvagGEVTTWP 175 569*************************************9854448888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MVRTPTIIPL RPNYSPPGDG AAFRREPATY SRFPPAAARN ECDLTFGQER KREGMKGKPP 60 ISRKIIYNHR DFVSMGERFV ALCFIFTMSP CIDATLFVRV VLDFVRREET RRDEMPRTKL 120 VLKLIENEKK RKATFKNRRD GLKQKVSQFA TLCGVEALLI CVAPAVAGGE VTTWPPDRAA 180 VLDLIARLRA TPPEKIRQLH NTQSLLRDDL DKQQRLLLKV QKCGADDVLT PWHCSLYDLS 240 LDGLNALHDT LSETLDRAHR RIAALGGGHG HVHDDAASSS EFSVPAPAPH AVALPDNAFD 300 FPFAPSNTGP VVGAHYFYPL HDTLPLPLPL PQQVPGQHPP CIAYQMPPPP CLAYQMPPPP 360 PPSLAAAPFD QCMSATGFMD SNPYATHIMH GGSTAAGLLD DHGQIFSAGA GYDDDDILGH 420 GFGFAAGTGY DLDPRMATAD VWPMNTLNNI PNDGGIGFQL QNDLKWMLPG GSNGSNLQGG 480 FQI

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MVRTPTIIPL RPNYSPPGDG AAFRREPATY SRFPPAAARN ECDLTFGQER KREGMKGKPP  60
ISRKIIYNHR DFVSMGERFV ALCFIFTMSP CIDATLFVRV VLDFVRREET RRDEMPRTKL  120
VLKLIENEKK RKATFKNRRD GLKQKVSQFA TLCGVEALLI CVAPAVAGGE VTTWPPDRAA  180
VLDLIARLRA TPPEKIRQLH NTQSLLRDDL DKQQRLLLKV QKCGADDVLT PWHCSLYDLS  240
LDGLNALHDT LSETLDRAHR RIAALGGGHG HVHDDAASSS EFSVPAPAPH AVALPDNAFD  300
FPFAPSNTGP VVGAHYFYPL HDTLPLPLPL PQQVPGQHPP CIAYQMPPPP CLAYQMPPPP  360
PPSLAAAPFD QCMSATGFMD SNPYATHIMH GGSTAAGLLD DHGQIFSAGA GYDDDDILGH  420
GFGFAAGTGY DLDPRMATAD VWPMNTLNNI PNDGGIGFQL QNDLKWMLPG GSNGSNLQGG  480
FQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-11	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G46080.1