PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G45020.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 426aa    MW: 44408.1 Da    PI: 5.7611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G45020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.67.7e-85414233374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       l+l+cA+ v+ gdl  a+++ + +   a p+g++  Rla++f++AL a   +      k  +        ++ + aa+ ++ ++ P+l+f+hl
  ONIVA01G45020.1  41 GLVLACADLVHRGDLDGARRVAEAVLAVADPRGEAGDRLAHHFARALLALRGG-----GKGGHGGGG--GGVVPSSAAYLAYIKIAPFLRFAHL 127
                      5789******************************************9886666.....222222222..236667789999************* PP

             GRAS  97 taNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      taNqaIlea++ +         + +Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+
  ONIVA01G45020.1 128 TANQAILEAAAVAaadaggahrRVLHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFR 217
                      ********98766666777784455************************88888899*********....************************ PP

             GRAS 178 fnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflea 260
                      f++l    + +l++  + +L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a
  ONIVA01G45020.1 218 FHPLilpCTAELAADPTAALELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAA 306
                      ****554445666668899********************8.5666666....*******************888655577788999******** PP

             GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                      ++yys++fd+lea++p++s +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ ++
  ONIVA01G45020.1 307 MDYYSSVFDALEATVPPASADRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKADD 400
                      *********************************************************************************************9 PP

             GRAS 354 e..sgslvlgWkdrpLvsvSaWr 374
                      +  +g+ +l W++rpL+svS+W+
  ONIVA01G45020.1 401 DggRGACFLRWQQRPLMSVSSWQ 423
                      96667788**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MLGSSPARDR GGGDDAEASE QPQPQPQPPL SPRAGGGEAR GLVLACADLV HRGDLDGARR  60
VAEAVLAVAD PRGEAGDRLA HHFARALLAL RGGGKGGHGG GGGGVVPSSA AYLAYIKIAP  120
FLRFAHLTAN QAILEAAAVA AADAGGAHRR VLHIVDLDAA HGVQWPPLLQ AIADRADPAV  180
GPPPEVRLTG AGTDRDVLLR TGDRLRAFSS SLNLPFRFHP LILPCTAELA ADPTAALELH  240
PDETLAVNCV LFLHKLGGDG ELAAFLRWVK SMNPAVVTIA EREGVLGGDV DDDNVPDELP  300
RRVAAAMDYY SSVFDALEAT VPPASADRLA VEQEILSREI DAAVAAPGAG GGGRARDFDA  360
WASAARAAGL APRPLSAFAA SQARLLLRLH YPSEGYKADD DGGRGACFLR WQQRPLMSVS  420
SWQPQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192101GGGKGGHGGG
293102GGGKGGHGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.17e-56GRAS family protein