PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G44280.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 562aa    MW: 62737.6 Da    PI: 4.6618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G44280.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.24.4e-1291845502371
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+a+s+ +  +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal+++e +   +  +l+a+++++e++P+++f++
  ONIVA01G44280.1 184 KQLLFDCATALSDYNVDEAQAIITDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALSCKEPP---TLYQLSAMQILFEICPCFRFGF 274
                      589*****************************************************************9...89999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIlea +ge+rvHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+k+Ae +g++fef++ v  ++ 
  ONIVA01G44280.1 275 MAANYAILEACKGEDRVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VGANIG 367
                      ********************************************************99778889***********************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf e  +yy+alfdsl+a+lpres +
  ONIVA01G44280.1 368 DVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYAALFDSLDATLPRESPD 461
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF+p p+s+++ + +++ll+ + ++ y+ ee++g l +gW +++L+  S
  ONIVA01G44280.1 462 RMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTPCPFSSNVISGIRSLLKSYCDR-YKFEEDHGGLHFGWGEKTLILNS 550
                      ****************************************************************66.*******************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MSFIRRADPS TTYADNLYIH KFGTPNSNFA ARRYASDTQL FRYGPEPYNP ENSFYNQQAS  60
PMPYMVTADG HSPSSADNSC SDVAKDSPLV SNVSQQNSQS ISDNQSSELE VEFDEDDIRM  120
KLQELEHALL DDSDDILYEI SQAGSINDEW ADPMKNVILP NSPKESESSI SCAGSNNGEP  180
RTPKQLLFDC ATALSDYNVD EAQAIITDLR QMVSIQGDPS QRIAAYLVEG LAARIVASGK  240
GIYKALSCKE PPTLYQLSAM QILFEICPCF RFGFMAANYA ILEACKGEDR VHIIDFDINQ  300
GSQYITLIQF LKNNANKPRH LRITGVDDPE TVQRTVGGLK VIGQRLEKLA EDCGISFEFR  360
AVGANIGDVT PAMLDCRPGE ALVVNFAFQL HHLPDESVSI MNERDQLLRM VKGLQPKLVT  420
LVEQDANTNT APFQTRFREV YDYYAALFDS LDATLPRESP DRMNVERQCL AREIVNILAC  480
EGPDRVERYE VAGKWRARMT MAGFTPCPFS SNVISGIRSL LKSYCDRYKF EEDHGGLHFG  540
WGEKTLILNS MAKHGGVVEI TH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein