PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G43630.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 470aa MW: 51751.7 Da PI: 6.8033

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G43630.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	1.9e-06	231	252	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H ONIVA01G43630.3 231 FCLICGKGFKRDANLRMHMRGH 252 5*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MQQGILILTN RVFDSVPWTS LHVLQDLVNR SLLFLHSLGF SLPACIYLMT LKLKSKIKQV 60 KDIVQSMSNR ESQVAGGSSE AQAKQQLVTA DLTCIIIQLI STAGSLLPSM KNPISSNPAL 120 RHLSNTLCAP MILGTNCNLR PSANDEATIP DISKTHDYEE LMNSLNTTQA ESDEMMNCQN 180 PCGGEGSEPI PMEDHDVKES DDGGERENLP PGSYVVLQLE KEEILAPHTH FCLICGKGFK 240 RDANLRMHMR GHGDEYKTAA ALAKPSKDSS SESAPVTRYS CPYVGCKRNK EHKKFQPLKT 300 ILCVKNHYKR SHCDKSYTCS RCNTKKFSVI ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF 360 GHVALFQGHT PALPMDDIKV TGASEQPQGS EAMNTMVGSA GYNFPGSSSD DIPNLDMKMA 420 DDPRYFSPLS FDPCFGGLDD FTRPGFDISE NPFSFLPSGS CSFGQQNGDS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MQQGILILTN RVFDSVPWTS LHVLQDLVNR SLLFLHSLGF SLPACIYLMT LKLKSKIKQV  60
KDIVQSMSNR ESQVAGGSSE AQAKQQLVTA DLTCIIIQLI STAGSLLPSM KNPISSNPAL  120
RHLSNTLCAP MILGTNCNLR PSANDEATIP DISKTHDYEE LMNSLNTTQA ESDEMMNCQN  180
PCGGEGSEPI PMEDHDVKES DDGGERENLP PGSYVVLQLE KEEILAPHTH FCLICGKGFK  240
RDANLRMHMR GHGDEYKTAA ALAKPSKDSS SESAPVTRYS CPYVGCKRNK EHKKFQPLKT  300
ILCVKNHYKR SHCDKSYTCS RCNTKKFSVI ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF  360
GHVALFQGHT PALPMDDIKV TGASEQPQGS EAMNTMVGSA GYNFPGSSSD DIPNLDMKMA  420
DDPRYFSPLS FDPCFGGLDD FTRPGFDISE NPFSFLPSGS CSFGQQNGDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-148	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G43630.3