PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G43630.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 636aa MW: 69115.8 Da PI: 6.7413

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G43630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.8e-06	397	418	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H ONIVA01G43630.1 397 FCLICGKGFKRDANLRMHMRGH 418 5*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MENCLRSTGA RNQQGCSSYK ATHPPSRVPF LLPCGASNST RVLLHLQLHI RSDPCYLVPP 60 LSLLRNRLAV RHHGDSTSIS PRSPSTPPLA AAAALAVAVA SADPIPIHPG DREQGAGGLG 120 RSSETSLKAL PSMASNATRN TDPDQQGVRF SSMDQPPCFA RPGQSFPAFP PLFGVQSSSL 180 YLPDDIEAKI GNQFESNPSP NNPTMDWDPQ AMLSNLSFLE QKIKQVKDIV QSMSNRESQV 240 AGGSSEAQAK QQLVTADLTC IIIQLISTAG SLLPSMKNPI SSNPALRHLS NTLCAPMILG 300 TNCNLRPSAN DEATIPDISK THDYEELMNS LNTTQAESDE MMNCQNPCGG EGSEPIPMED 360 HDVKESDDGG ERENLPPGSY VVLQLEKEEI LAPHTHFCLI CGKGFKRDAN LRMHMRGHGD 420 EYKTAAALAK PSKDSSSESA PVTRYSCPYV GCKRNKEHKK FQPLKTILCV KNHYKRSHCD 480 KSYTCSRCNT KKFSVIADLK THEKHCGRDK WLCSCGTTFS RKDKLFGHVA LFQGHTPALP 540 MDDIKVTGAS EQPQGSEAMN TMVGSAGYNF PGSSSDDIPN LDMKMADDPR YFSPLSFDPC 600 FGGLDDFTRP GFDISENPFS FLPSGSCSFG QQNGDS

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MENCLRSTGA RNQQGCSSYK ATHPPSRVPF LLPCGASNST RVLLHLQLHI RSDPCYLVPP  60
LSLLRNRLAV RHHGDSTSIS PRSPSTPPLA AAAALAVAVA SADPIPIHPG DREQGAGGLG  120
RSSETSLKAL PSMASNATRN TDPDQQGVRF SSMDQPPCFA RPGQSFPAFP PLFGVQSSSL  180
YLPDDIEAKI GNQFESNPSP NNPTMDWDPQ AMLSNLSFLE QKIKQVKDIV QSMSNRESQV  240
AGGSSEAQAK QQLVTADLTC IIIQLISTAG SLLPSMKNPI SSNPALRHLS NTLCAPMILG  300
TNCNLRPSAN DEATIPDISK THDYEELMNS LNTTQAESDE MMNCQNPCGG EGSEPIPMED  360
HDVKESDDGG ERENLPPGSY VVLQLEKEEI LAPHTHFCLI CGKGFKRDAN LRMHMRGHGD  420
EYKTAAALAK PSKDSSSESA PVTRYSCPYV GCKRNKEHKK FQPLKTILCV KNHYKRSHCD  480
KSYTCSRCNT KKFSVIADLK THEKHCGRDK WLCSCGTTFS RKDKLFGHVA LFQGHTPALP  540
MDDIKVTGAS EQPQGSEAMN TMVGSAGYNF PGSSSDDIPN LDMKMADDPR YFSPLSFDPC  600
FGGLDDFTRP GFDISENPFS FLPSGSCSFG QQNGDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-156	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G43630.1