PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G36850.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 526aa MW: 55420.5 Da PI: 8.6394

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G36850.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107	1.5e-33	319	434	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg ONIVA01G36850.1 319 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 412 7*******************************998555559*********************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ l+ +l++l+++ ONIVA01G36850.1 413 TILALQHQVSLLQGQLSVLESQ 434 **************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MRNSATPAAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI 60 PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG 120 CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPSCGN RRTQLGVTVR 180 LRVVRHREKG WGLHAAEVLR RGQFVCEYAG ELLTTEEARR RQGLYDELAS VDDWPRRAAR 240 AHAPGRHGSV ARHARAHFKN PSLPPWYPRA RALALAHTHA HMHAAQPPGS SKRRGAVERP 300 ASGAGLQAEE ASSAGPGAPC GACKFLRRRC VPGCVFAPHF SGCGGSGVGA GVGGRGRERG 360 AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ ARIADPVYGS VGTILALQHQ 420 VSLLQGQLSV LESQLFNLRV ALASAHPDTP PQHFVVLQPA HSAASTPNQV VVNYDDLPHA 480 VDLMDAEPAA LRGLESLQLS QPLQREEDEG HRDMNLFSDS VGQRQL

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MRNSATPAAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI  60
PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG  120
CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPSCGN RRTQLGVTVR  180
LRVVRHREKG WGLHAAEVLR RGQFVCEYAG ELLTTEEARR RQGLYDELAS VDDWPRRAAR  240
AHAPGRHGSV ARHARAHFKN PSLPPWYPRA RALALAHTHA HMHAAQPPGS SKRRGAVERP  300
ASGAGLQAEE ASSAGPGAPC GACKFLRRRC VPGCVFAPHF SGCGGSGVGA GVGGRGRERG  360
AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ ARIADPVYGS VGTILALQHQ  420
VSLLQGQLSV LESQLFNLRV ALASAHPDTP PQHFVVLQPA HSAASTPNQV VVNYDDLPHA  480
VDLMDAEPAA LRGLESLQLS QPLQREEDEG HRDMNLFSDS VGQRQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-22	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G36850.1