PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G35630.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ARF

Protein Properties

Length: 710aa MW: 77837.6 Da PI: 8.237

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G35630.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.5	6.9e-25	174	275	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + ONIVA01G35630.2 174 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhkQLR--PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 263 99************************99865444..4669********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ ONIVA01G35630.2 264 DDGELRLGVRRA 275 89999**997 PP
2	Auxin_resp	113.4	2.1e-37	300	380	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF+++YnPra++se+vv+++k++k+++++v++GmRfk+++e+ed++err sG+++gvs++dp+rWp+SkWrsL ONIVA01G35630.2 300 VADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHYESEDVNERR-SGMIAGVSEVDPIRWPGSKWRSL 380 578899**************************************************.9******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPA 60 PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGR IRGEVAVALP PHVACRVVDV 120 ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT 240 TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV 300 ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHYES EDVNERRSGM 360 IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASNGN 420 GRPDSVETEK FPRVLQGQEL MGSRTHRVTC SPQSIDITKS KSFDAWRFLT DTRSCMLGSS 480 TSRLPVQYSG YTHQSVSFGE SIGFPEVLQG QEISQTVPPI QGMLPDACSA KSRYELKNYV 540 CTPATMNGLS SANEGYCLSL STVPPSPPSS LMLYQTGVPQ LELASKNNDK SGNDSQPALR 600 QHKLLSETSW DQFKIGKAST PGNATKPGNG GREVDRTSCR LFGFSLTEKI IPTDKDGEKE 660 VSYETDCQNP RMLDLFGYNC STPEVNARFA RCTSGARRGK SLITSVGYGR

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPA  60
PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGR IRGEVAVALP PHVACRVVDV  120
ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA  180
SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT  240
TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV  300
ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHYES EDVNERRSGM  360
IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASNGN  420
GRPDSVETEK FPRVLQGQEL MGSRTHRVTC SPQSIDITKS KSFDAWRFLT DTRSCMLGSS  480
TSRLPVQYSG YTHQSVSFGE SIGFPEVLQG QEISQTVPPI QGMLPDACSA KSRYELKNYV  540
CTPATMNGLS SANEGYCLSL STVPPSPPSS LMLYQTGVPQ LELASKNNDK SGNDSQPALR  600
QHKLLSETSW DQFKIGKAST PGNATKPGNG GREVDRTSCR LFGFSLTEKI IPTDKDGEKE  660
VSYETDCQNP RMLDLFGYNC STPEVNARFA RCTSGARRGK SLITSVGYGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-149	ARF family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G35630.2