PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G31290.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

RAV

Protein Properties

Length: 393aa MW: 41181.3 Da PI: 9.3407

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G31290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5.3e-12	80	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ r +r++lg+f +++Aa+a++ a+++++g ONIVA01G31290.1 80 SKFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEDDAARAYDVAAQRFRG 128 79**9888.8*****......44******99***********98 PP
2	B3	98.1	5.4e-31	216	308	1	86
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ ONIVA01G31290.1 216 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSA 308 89*****************************5556799***********************************************9653 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG 60 RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD 120 VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKAEV VDMLRKHTYF DELAQSKRTF 180 AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK 240 HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD 300 VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPV 360 EQMAGCKRAR DLAATTPPQA AAFKKQCIEL ALV

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG  60
RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD  120
VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKAEV VDMLRKHTYF DELAQSKRTF  180
AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK  240
HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD  300
VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPV  360
EQMAGCKRAR DLAATTPPQA AAFKKQCIEL ALV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	67	GGRVCGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-106	RAV family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G31290.1