PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G29290.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 714aa    MW: 78275.1 Da    PI: 7.2593
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G29290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.9e-24142243199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F   + +
  ONIVA01G29290.1 142 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFL--RGE 232
                      99****************************9966654.569************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  ONIVA01G29290.1 233 DGELRLGVRRA 243
                      999*****996 PP
2Auxin_resp108.38.2e-36268348182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha++ ks+F+++YnPr s+seF+++++k+++++++++svGmRfk+++e+ed+serr +G+++g +++dp  W++SkW++L
  ONIVA01G29290.1 268 VAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADP-MWHGSKWKCL 348
                      799********************************************************************.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY  60
LPQGHLEHLG AAPGPAAVAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM  120
REGEDGEGED AVKRPARIPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSLQRPSQ  180
ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSGFINKKKL VSGDAVLFLR GEDGELRLGV  240
RRAAQLKNVS PFPALHNQIS NTSSLSEVAH AVAVKSIFHI YYNPRLSQSE FIIPYWKFMR  300
SFSQPFSVGM RFKLRYESED ASERRRTGII IGSREADPMW HGSKWKCLVV KWDDDVECRR  360
PNGVSPWEIE LSGSVSGSHL STPHSKRLKS CFPQVNPDIV LPNGSVSSDF AESARFHKVL  420
QGQELLGLKT RDGTVNTASQ ATEARNFQYT DERSCSINMS NNILGVPRLG VKTPSGNPGF  480
SYHCSGFGES QRFQEVLQGQ EVFRPYRGGT LSDACIRGSG FRPPDGNHAS GAAFKWLAPQ  540
GCDHHGITTS VLPQASSPSS VLMFPQTSSK MPGLEYIYGC LDRNENSRHF KIGPTQDMAR  600
TDQTLRLWPH LISGKVLDEC TRNEKLHSPV GGAEHESNTN KCLNTNGCKI FGISLTEKAQ  660
AGDEVDCGNA SYHSRLQSLK PQMPKSLGSS CATVHEQRPV VGRVVDISAV NTMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-158ARF family protein