PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G28940.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 562aa MW: 58550.7 Da PI: 8.6603

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G28940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.5e-33	352	409	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ ONIVA01G28940.1 352 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 409 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MGVAVHWRRA GDPLHMGGEP RARAEAAWAA ALPAALVALV RDTATYTRMM HRLRMETPRG 60 PTCQLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP PASAAVSSRS DGTGQMAAGV 120 TLACAAPPPL RAPRASDGGR RRGVVKGGAG TDTCRSAATA KNHEHGQRRR EAAVDPAMSG 180 EYQFQDELAP LFARPGGGAG EMQMLPSSWF ADYLQAGTPM QMDYDLMCRA LELPVGEDVK 240 REVGVVDVVA AGGGGAPPLT PNTTSSMSTS SSEGVGGGGG GGAGAGAGEE ESPARCKKEE 300 DENKEEGKGE EDEGHKNKKG SAAKGGKAGK GEKRARQPRF AFMTKSEVDH LEDGYRWRKY 360 GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER SYQDPAVVIT TYEGKHTHPI PATLRGSTHL 420 LAAHAQASAA AAAAQQLHHH HGHHGHHGMA PPLPLGSGAA AQFGRSSGID VLSSFLPRAA 480 AAHHGMTTMG GAAATTTTSH GLNSAISGGG GVSSETTSAV TVAASAQPSS PAALQMQHFM 540 AQDLGLLQDM LLPSFIHGTN QP

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MGVAVHWRRA GDPLHMGGEP RARAEAAWAA ALPAALVALV RDTATYTRMM HRLRMETPRG  60
PTCQLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP PASAAVSSRS DGTGQMAAGV  120
TLACAAPPPL RAPRASDGGR RRGVVKGGAG TDTCRSAATA KNHEHGQRRR EAAVDPAMSG  180
EYQFQDELAP LFARPGGGAG EMQMLPSSWF ADYLQAGTPM QMDYDLMCRA LELPVGEDVK  240
REVGVVDVVA AGGGGAPPLT PNTTSSMSTS SSEGVGGGGG GGAGAGAGEE ESPARCKKEE  300
DENKEEGKGE EDEGHKNKKG SAAKGGKAGK GEKRARQPRF AFMTKSEVDH LEDGYRWRKY  360
GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER SYQDPAVVIT TYEGKHTHPI PATLRGSTHL  420
LAAHAQASAA AAAAQQLHHH HGHHGHHGMA PPLPLGSGAA AQFGRSSGID VLSSFLPRAA  480
AAHHGMTTMG GAAATTTTSH GLNSAISGGG GVSSETTSAV TVAASAQPSS PAALQMQHFM  540
AQDLGLLQDM LLPSFIHGTN QP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-47	WRKY family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G28940.1