PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G27630.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 333aa MW: 36118.6 Da PI: 7.9986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G27630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.3	1.7e-15	259	284	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg ONIVA01G27630.1 259 FKTELCNKWEETGDCPYGDQCQFAHG 284 79***********************9 PP
2	zf-CCCH	18.9	2.7e-06	297	322	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ Cr +++ C+yG rC+F H+ ONIVA01G27630.1 297 YKTAVCRMVLAGDVCPYGHRCHFRHS 322 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MQEALVSPMR SALELKPFNF GDQRLASSPR YLPSGDDALY RCSSPFSPSF GFSSPSPLAT 60 SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAEAAEEA 120 AALRLENAEL RVTNSDLALR LALLSGKHTA AVAVADEIRR LRLGEQKVAA ATKERTPEKL 180 AVLPKSISVR STSYLKLNQQ SQAATATSAA PNRKPRTSSN PTNPPNSQRA YDGGKKGDEQ 240 KAQPADSGAE LEVYNQGMFK TELCNKWEET GDCPYGDQCQ FAHGVTELRP VIRHPRYKTA 300 VCRMVLAGDV CPYGHRCHFR HSLTPAERLL LRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	3e-50	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G27630.1