PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G27630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 333aa    MW: 36118.6 Da    PI: 7.9986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G27630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.31.7e-15259284126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG C+yGd+C+FaHg
  ONIVA01G27630.1 259 FKTELCNKWEETGDCPYGDQCQFAHG 284
                      79***********************9 PP

2zf-CCCH18.92.7e-06297322126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ Cr  +++  C+yG rC+F H+
  ONIVA01G27630.1 297 YKTAVCRMVLAGDVCPYGHRCHFRHS 322
                      9**********55**********998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MQEALVSPMR SALELKPFNF GDQRLASSPR YLPSGDDALY RCSSPFSPSF GFSSPSPLAT  60
SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAEAAEEA  120
AALRLENAEL RVTNSDLALR LALLSGKHTA AVAVADEIRR LRLGEQKVAA ATKERTPEKL  180
AVLPKSISVR STSYLKLNQQ SQAATATSAA PNRKPRTSSN PTNPPNSQRA YDGGKKGDEQ  240
KAQPADSGAE LEVYNQGMFK TELCNKWEET GDCPYGDQCQ FAHGVTELRP VIRHPRYKTA  300
VCRMVLAGDV CPYGHRCHFR HSLTPAERLL LRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-50C3H family protein