PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G25920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 441aa    MW: 48098.6 Da    PI: 7.5863
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G25920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-11107132227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C f++ t tCk+G++CkF H++
  ONIVA01G25920.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132
                      7889********************97 PP

2zf-CCCH40.64.2e-13157182227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++tG Ck+G++CkF+H++
  ONIVA01G25920.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182
                      789*********************96 PP

3zf-CCCH21.15.6e-07196215827
                      GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                      f+a+tG Ck+ + CkF+H++
  ONIVA01G25920.1 196 FYAKTGKCKFRAMCKFNHPK 215
                      9*****************96 PP

4zf-CCCH39.97e-13268293126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+f++++G Ck+G++C+F+H+
  ONIVA01G25920.1 268 PGEVDCPFYMKMGSCKFGSTCRFNHP 293
                      57899********************9 PP

5zf-CCCH36.21e-11351372526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+f+++tG+Ck+ drCkF+H+
  ONIVA01G25920.1 351 VCDFYMKTGFCKFADRCKFHHP 372
                      7********************8 PP

6zf-CCCH33.95.3e-11406428527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C f+++tG Ck+G +CkF H+p
  ONIVA01G25920.1 406 VCAFYMKTGVCKFGMQCKFDHPP 428
                      7********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKVNALAS GKTNDFYAKT GKCKFRAMCK FNHPKDIEIP SSQNEPESAV TVEGETDIGS  240
AADSVSAKMQ TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG SCKFGSTCRF NHPDRLVLNF  300
PLPLGQTILP TPESMLLNSS ANFMQGFDFH AAHMPVGPGP VTYPQRPGAT VCDFYMKTGF  360
CKFADRCKFH HPIDRSAPDP SANWEPAEES VQLTLAGLPR REDAVVCAFY MKTGVCKFGM  420
QCKFDHPPPQ EAIAKVSNSG S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-134C3H family protein