PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G25920.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 441aa MW: 48098.6 Da PI: 7.5863

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G25920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	5.1e-11	107	132	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++ t tCk+G++CkF H++ ONIVA01G25920.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132 7889********************97 PP
2	zf-CCCH	40.6	4.2e-13	157	182	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tG Ck+G++CkF+H++ ONIVA01G25920.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182 789*********************96 PP
3	zf-CCCH	21.1	5.6e-07	196	215	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+a+tG Ck+ + CkF+H++ ONIVA01G25920.1 196 FYAKTGKCKFRAMCKFNHPK 215 9*****************96 PP
4	zf-CCCH	39.9	7e-13	268	293	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++++G Ck+G++C+F+H+ ONIVA01G25920.1 268 PGEVDCPFYMKMGSCKFGSTCRFNHP 293 57899********************9 PP
5	zf-CCCH	36.2	1e-11	351	372	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG+Ck+ drCkF+H+ ONIVA01G25920.1 351 VCDFYMKTGFCKFADRCKFHHP 372 7********************8 PP
6	zf-CCCH	33.9	5.3e-11	406	428	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C f+++tG Ck+G +CkF H+p ONIVA01G25920.1 406 VCAFYMKTGVCKFGMQCKFDHPP 428 7********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR 60 SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC 120 KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH 180 PKEKVNALAS GKTNDFYAKT GKCKFRAMCK FNHPKDIEIP SSQNEPESAV TVEGETDIGS 240 AADSVSAKMQ TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG SCKFGSTCRF NHPDRLVLNF 300 PLPLGQTILP TPESMLLNSS ANFMQGFDFH AAHMPVGPGP VTYPQRPGAT VCDFYMKTGF 360 CKFADRCKFH HPIDRSAPDP SANWEPAEES VQLTLAGLPR REDAVVCAFY MKTGVCKFGM 420 QCKFDHPPPQ EAIAKVSNSG S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKVNALAS GKTNDFYAKT GKCKFRAMCK FNHPKDIEIP SSQNEPESAV TVEGETDIGS  240
AADSVSAKMQ TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG SCKFGSTCRF NHPDRLVLNF  300
PLPLGQTILP TPESMLLNSS ANFMQGFDFH AAHMPVGPGP VTYPQRPGAT VCDFYMKTGF  360
CKFADRCKFH HPIDRSAPDP SANWEPAEES VQLTLAGLPR REDAVVCAFY MKTGVCKFGM  420
QCKFDHPPPQ EAIAKVSNSG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-134	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G25920.1