PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G25680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 1463aa MW: 151521 Da PI: 3.6962 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 34.3 | 4e-11 | 1373 | 1397 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ ONIVA01G25680.1 1373 CGSCRILLAYFRGAGYVHCTCCQTM 1397 ***********************96 PP | |||||||
2 | zf-LSD1 | 40.5 | 4.6e-13 | 1411 | 1435 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V ONIVA01G25680.1 1411 CGHCATLLMYPFGAPAVKCSLCLFV 1435 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1463 aa Download sequence |
MASSPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP 60 GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP 120 SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA 180 RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPPTPPLES 240 GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG 300 STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA 360 AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA 420 ENDAVEEMQE EAHGSRFAME ATCGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS 480 TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA 540 AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS PVLDSGDPDA 600 AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG 660 SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKFAM EVMYGETGTA 720 AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC 780 KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDVEK PASITQAEPS 840 SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM 900 ESDTVLSILP TTVLPTEGTE GLLQQPLLGP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC 960 SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL 1020 PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESLQKPL 1080 PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP 1140 QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS 1200 EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK 1260 NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA 1320 MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL 1380 AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE 1440 RNVRRRLSIE QPTRTNSSGL AEA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 4e-29 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G25680.1 |