PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G25680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 1463aa    MW: 151521 Da    PI: 3.6962
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G25680.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD134.34e-1113731397125
          zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                       Cg+Cr+lL+Y+rGA +V+C++C+t+
  ONIVA01G25680.1 1373 CGSCRILLAYFRGAGYVHCTCCQTM 1397
                       ***********************96 PP

2zf-LSD140.54.6e-1314111435125
          zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                       Cg+C tlL+YP+GAp+V+C+lC +V
  ONIVA01G25680.1 1411 CGHCATLLMYPFGAPAVKCSLCLFV 1435
                       **********************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1463 aa     Download sequence    
MASSPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP  120
SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA  180
RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPPTPPLES  240
GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG  300
STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA  360
AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA  420
ENDAVEEMQE EAHGSRFAME ATCGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS  480
TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA  540
AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS PVLDSGDPDA  600
AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG  660
SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKFAM EVMYGETGTA  720
AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC  780
KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDVEK PASITQAEPS  840
SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM  900
ESDTVLSILP TTVLPTEGTE GLLQQPLLGP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC  960
SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL  1020
PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESLQKPL  1080
PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP  1140
QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS  1200
EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK  1260
NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA  1320
MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL  1380
AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE  1440
RNVRRRLSIE QPTRTNSSGL AEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.14e-29LSD family protein