PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G25110.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 301aa    MW: 31284.8 Da    PI: 7.6357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G25110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-13134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  ONIVA01G25110.1 134 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 178
                      8******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MARKCSHCGN YGHNSRTCSS SASAGHRDTT MLCDGGDGGG GSGLRLFGVQ VHVAAGGGGG  60
GGGGGLPMKK SYSMDCLQLA AAGAAPGSLV SPSSSSSSSM LLSIDEGGLE RASNGYLSDG  120
PHGRIVQERK KGVPWSEEEH RLFLVGLEKL GKGDWRGISR SYVTTRTPTQ VASHAQKFFL  180
RQSSIGKKKR RSSLFDMVPI CENGARVSEQ LSGEGAAAAA AASTSLSLMN THETSSDRVA  240
AIDLNSTEED DTVGTSGRPF FPVVLMEQQQ QASHGHGHHH HCTPLDLELG MSVSSTPSIG  300
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-46MYB_related family protein