PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22710.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 526aa MW: 55899.3 Da PI: 7.9535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H ONIVA01G22710.1 94 FVCEICGKGFQRDQNLQLHRRGH 116 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MFHHHLQQQQ QQQEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPSSGNNG 60 NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW 120 KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY 180 AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP 240 GHHHHHQLLF SPPPVMAHHQ ELAALQEQQQ QQHHQDVMQS PHQHQQQLVQ QNCGYAVKPE 300 MAPWPTTMPY DHHHPLLQPL CNANAAATAQ SSATSAPPTT PQLPAAAAAA HLSATALLQK 360 AAQMGATIGG AGTGAAGAHY AHMASPAGAG APAGGSATFG LGLSCLNTHQ DGGGGGGNGL 420 IPAGMMGHLA RTASHGRSGE DVAGAGGGGG DGMTRDFLGL RAFSHRDILL AGFDSSCMGH 480 VNAAAGMAGY EPPPPHHGQP QHQHQQQQQQ QQGGSNEPWH GMGSHS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MFHHHLQQQQ QQQEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTAPP PPPPSSGNNG  60
NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW  120
KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY  180
AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP  240
GHHHHHQLLF SPPPVMAHHQ ELAALQEQQQ QQHHQDVMQS PHQHQQQLVQ QNCGYAVKPE  300
MAPWPTTMPY DHHHPLLQPL CNANAAATAQ SSATSAPPTT PQLPAAAAAA HLSATALLQK  360
AAQMGATIGG AGTGAAGAHY AHMASPAGAG APAGGSATFG LGLSCLNTHQ DGGGGGGNGL  420
IPAGMMGHLA RTASHGRSGE DVAGAGGGGG DGMTRDFLGL RAFSHRDILL AGFDSSCMGH  480
VNAAAGMAGY EPPPPHHGQP QHQHQQQQQQ QQGGSNEPWH GMGSHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	134	KLKQRGSKEAVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	4e-90	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G22710.1