PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22690.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 784aa MW: 84660.8 Da PI: 5.9868

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22690.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.8e-06	460	482	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ar G C Gd C++ H ONIVA01G22690.2 460 KSKPCTHYAR-GSCLKGDDCPYDH 482 6789****.*********** PP
2	zf-CCCH	30.9	4.6e-10	488	509	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ ONIVA01G22690.2 488 PCHNFMENGMCIRGDKCKFSHV 509 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP 60 DAEVEPAAAA AIPPGGSGGL PHGDSPPPAD VGGDRGKNLE VEVALGNHAP HETPSTSASP 120 DAAVNPTTDP GVVPQGTEEG RVAGVERVEG VEEVVFAGGT SGEADADGDE LGAGAGLMGD 180 DEALRSMQAC LDGEDSELVI EMVGNDNEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG 240 DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGF EEGEIEGDTQ NLDADDSGNS 300 ELQDDVELEE DFDSRRIEED GSCGHDLKSN LHLIPQKGNG DTARNMLCNS KGDSQMHVAR 360 AQAVSYDEVL DWNETPLPDD KALKHGNTRK RTLTEERKAK KTKTKRIKRA LQREAEGVKR 420 LKLQPVIKPK VVKVCHFYLH GKCQQGNLCK FSHDTTPLTK SKPCTHYARG SCLKGDDCPY 480 DHELSKYPCH NFMENGMCIR GDKCKFSHVI PTAEGPSTPD AKKSNASSVP EKANCQEQTS 540 RQKTSTVYSG EPATSVPIKH HSILKNLAGI SGNAQKDVVS TEKHKNPTGG PHQNFGRPQP 600 ADGKKLDKHN GHRSAPLLDE KDSSKQANLH PCSEPKKNSL PTTAAVPSSH TWMLFSDEPV 660 PMRLCSIFCI PHTSFIAVTP SCKLQLLMWT YFAELGANIY CQILKIGNYQ MNALLFNPQA 720 YNSKSQFLIF ISLQQQEANS AAKGSMPVCI RQLVLSMFLN KDLNWKVGVY LFVWDYENAK 780 RHMT

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP  60
DAEVEPAAAA AIPPGGSGGL PHGDSPPPAD VGGDRGKNLE VEVALGNHAP HETPSTSASP  120
DAAVNPTTDP GVVPQGTEEG RVAGVERVEG VEEVVFAGGT SGEADADGDE LGAGAGLMGD  180
DEALRSMQAC LDGEDSELVI EMVGNDNEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG  240
DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGF EEGEIEGDTQ NLDADDSGNS  300
ELQDDVELEE DFDSRRIEED GSCGHDLKSN LHLIPQKGNG DTARNMLCNS KGDSQMHVAR  360
AQAVSYDEVL DWNETPLPDD KALKHGNTRK RTLTEERKAK KTKTKRIKRA LQREAEGVKR  420
LKLQPVIKPK VVKVCHFYLH GKCQQGNLCK FSHDTTPLTK SKPCTHYARG SCLKGDDCPY  480
DHELSKYPCH NFMENGMCIR GDKCKFSHVI PTAEGPSTPD AKKSNASSVP EKANCQEQTS  540
RQKTSTVYSG EPATSVPIKH HSILKNLAGI SGNAQKDVVS TEKHKNPTGG PHQNFGRPQP  600
ADGKKLDKHN GHRSAPLLDE KDSSKQANLH PCSEPKKNSL PTTAAVPSSH TWMLFSDEPV  660
PMRLCSIFCI PHTSFIAVTP SCKLQLLMWT YFAELGANIY CQILKIGNYQ MNALLFNPQA  720
YNSKSQFLIF ISLQQQEANS AAKGSMPVCI RQLVLSMFLN KDLNWKVGVY LFVWDYENAK  780
RHMT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	2e-06	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G22690.2