PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 784aa    MW: 84660.8 Da    PI: 5.9868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22690.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-06460482225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C ++ar G C  Gd C++ H
  ONIVA01G22690.1 460 KSKPCTHYAR-GSCLKGDDCPYDH 482
                      6789******.************* PP

2zf-CCCH30.94.6e-10488509526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  ONIVA01G22690.1 488 PCHNFMENGMCIRGDKCKFSHV 509
                      7********************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    
MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP  60
DAEVEPAAAA AIPPGGSGGL PHGDSPPPAD VGGDRGKNLE VEVALGNHAP HETPSTSASP  120
DAAVNPTTDP GVVPQGTEEG RVAGVERVEG VEEVVFAGGT SGEADADGDE LGAGAGLMGD  180
DEALRSMQAC LDGEDSELVI EMVGNDNEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG  240
DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGF EEGEIEGDTQ NLDADDSGNS  300
ELQDDVELEE DFDSRRIEED GSCGHDLKSN LHLIPQKGNG DTARNMLCNS KGDSQMHVAR  360
AQAVSYDEVL DWNETPLPDD KALKHGNTRK RTLTEERKAK KTKTKRIKRA LQREAEGVKR  420
LKLQPVIKPK VVKVCHFYLH GKCQQGNLCK FSHDTTPLTK SKPCTHYARG SCLKGDDCPY  480
DHELSKYPCH NFMENGMCIR GDKCKFSHVI PTAEGPSTPD AKKSNASSVP EKANCQEQTS  540
RQKTSTVYSG EPATSVPIKH HSILKNLAGI SGNAQKDVVS TEKHKNPTGG PHQNFGRPQP  600
ADGKKLDKHN GHRSAPLLDE KDSSKQANLH PCSEPKKNSL PTTAAVPSSH TWMLFSDEPV  660
PMRLCSIFCI PHTSFIAVTP SCKLQLLMWT YFAELGANIY CQILKIGNYQ MNALLFNPQA  720
YNSKSQFLIF ISLQQQEANS AAKGSMPVCI RQLVLSMFLN KDLNWKVGVY LFVWDYENAK  780
RHMT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.12e-06C3H family protein