PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G20310.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 306aa    MW: 31944.7 Da    PI: 7.8962
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G20310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  ONIVA01G20310.1 143 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 187
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MTSQAATTTT TAAAAAAWTR EDDKAFENAL AACAAPPPAD GGAPDDDWFA ALAASVPGAR  60
SAEEVRRHYE ALVEDVAAID AGRVPLPRYA GEESAAPPDG AGAAAAASKD GGHRRDERKG  120
GGGGYDGGKS CSKAEQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV  180
ASHAQKYFIR LNSMNRDRRR SSIHDITSVT AGDQVAAQQG APITGHQATG NPAAAALGPP  240
GMKHHHHHHP GGAPPPMPMY SAAPMGHPVA GHMVPAAVGT PVMFPPGHAP YVVPVGYPAP  300
PAKMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-48MYB family protein