PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G18540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 191aa MW: 19708.4 Da PI: 7.0992 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H ONIVA01G18540.1 51 FECKTCNRQFPSFQALGGHRASH 73 89**********99999998887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
MAYGKRPRQQ AEEAAFSLFD SSDMARIMLL FSGAHGGGGG AAAASPPERM FECKTCNRQF 60 PSFQALGGHR ASHKKPRLAD GDPAAEAPAK PKVHGCSICG LEFAVGQALG GHMRRHRAVM 120 ADGLGLGLSL GLGIGVVGQS DDDGGKKKAA AAAAAAELVF DLNAPAIEEE PDRARPAGLA 180 VEFPVVVDFP C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 1e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G18540.1 |