PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G16980.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 406aa    MW: 42586.8 Da    PI: 4.3482
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G16980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.6e-094271639
                     HHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF 16 RrngilKKAeELSvLCdaevavii 39
                     R+++++K A+ELSvLCd+ va++ 
  ONIVA01G16980.1  4 RKETVIKMAKELSVLCDVPVALVC 27
                     9********************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MAGRKETVIK MAKELSVLCD VPVALVCAVG GAVEVWESEE GVLDRYRALP PEVRATRAHT  60
HRGYLERELR ARRSKLAKVR EEGAFKSWGR DALSGIITAE EAPALLESID AAIAAATARQ  120
EALALLDGGG LHLQHVPASA SDAVAPVVGG HGVQVQYIGG SGGGGGSQQE MTPAADGDGA  180
RNADQYDDIL PWDGNTFEAH NAHVMLPACG FQCTGDYRVD MDGYVWGAPD DANAYHGWPD  240
EAMWCTDESC SCNAATATAV PAMYHPPTLD TVHGSFLAAP AQPLAFSTGA DFINAPNDFL  300
TVGVGGSFIN VGDYSAQSLA DEFHHLSDAT NQLDQTHYPP FGGTGGAEPG DTLSHSWGDY  360
YLAQSSANEC QLLGVDGGDI HLDQTHCLGG AGGAEPGDTK SHNWDG