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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA01G13400.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | MYB | ||||||||
| Protein Properties | Length: 341aa MW: 36078.1 Da PI: 7.9472 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 49 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+d+v+q+G+ +W++Ia+++ gR++k+c++rw++
ONIVA01G13400.1 49 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 94
899*****************************.***********996 PP
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| 2 | Myb_DNA-binding | 57.5 | 3e-18 | 101 | 145 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r ++T+eE+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ +
ONIVA01G13400.1 101 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 145
678*******************.*********.***********987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 341 aa Download sequence |
MAHEMMGGFF GHPPPPPATA AVGEEEEEVV EETEEGGHGG GVQGKLCARG HWRPAEDAKL 60 KDLVAQYGPQ NWNLIAEKLD GRSGKSCRLR WFNQLDPRIN RRAFTEEEEE RLMAAHRAYG 120 NKWALIARLF PGRTDNAVKN HWHVLMARRH REQSGAFRRR KPSSSSASPA PAPAPAPPPP 180 PQPVVALHHH HHRYSQQYSG YSGAAESDES ASTCTTDLSL SSGSAAAAAA AAAAAANIPC 240 CFYQSTPRAS SSSTAACRAP RVAAAADTVA FFPGAGYDFA AAPHAMAPAA ASTFAPSARS 300 AFSAPARRGE PPGAVDQRGG AHATTDSHTI PFFDFLGVGA T |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69560.1 | 4e-71 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA01G13400.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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