PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G12470.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 476aa MW: 49779.7 Da PI: 7.597

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G12470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	4.9e-11	60	86	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e C +++rtG C +GdrC+++H++ ONIVA01G12470.1 60 PGEEDCVYYLRTGACGFGDRCRYNHPR 86 5899*********************96 PP
2	zf-CCCH	37.8	3.1e-12	111	135	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tGtCk+G +Ck++H++ ONIVA01G12470.1 111 QPICEYYMKTGTCKFGTNCKYHHPK 135 799********************96 PP
3	zf-CCCH	38.8	1.6e-12	156	180	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ ONIVA01G12470.1 156 EKECSYYMKTGQCKFGTTCKFHHPE 180 689********************96 PP
4	zf-CCCH	38.3	2.2e-12	308	334	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G++Ck++H++ ONIVA01G12470.1 308 PGQPDCQYYMRTGDCKFGATCKYHHPR 334 5789*********************96 PP
5	zf-CCCH	32	2.2e-10	357	380	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a++G+C+yG Ck+ H++ ONIVA01G12470.1 357 QPCAYYAQNGYCRYGVACKYDHPM 380 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEQPHAAAAA AGGGEGEGGA SPDTGLEGPM WRMGLGGGGG GGGGGGGGDG DAAGRLPERP 60 GEEDCVYYLR TGACGFGDRC RYNHPRDRGG TEFGGGARNA AALDYPERAG QPICEYYMKT 120 GTCKFGTNCK YHHPKQDGAV LPVMLNNSGF PIRLGEKECS YYMKTGQCKF GTTCKFHHPE 180 FGGVPMTPGI YPPLQSPSIA SPHPYASLAN WQMGRPPVVP GSYIPGSYTP MMLSSGMIPL 240 QGWSPYPASV NPVVSGGAQQ NVQAGPVYGM GHHGSSSTIA YGGPYVPYAS STGQSSNNQQ 300 EHGFPERPGQ PDCQYYMRTG DCKFGATCKY HHPRELSAPK SGYMVNSLCL PLRPGAQPCA 360 YYAQNGYCRY GVACKYDHPM GTLGYSPSAL PLSDMPIAPY PIGFSIATLA PSSPSPDLRP 420 EYISTKDQSV SQVTSPVAAS EPAGSILPKG VFPADTMMRA QTNTTSGGSS SPGGGR

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEQPHAAAAA AGGGEGEGGA SPDTGLEGPM WRMGLGGGGG GGGGGGGGDG DAAGRLPERP  60
GEEDCVYYLR TGACGFGDRC RYNHPRDRGG TEFGGGARNA AALDYPERAG QPICEYYMKT  120
GTCKFGTNCK YHHPKQDGAV LPVMLNNSGF PIRLGEKECS YYMKTGQCKF GTTCKFHHPE  180
FGGVPMTPGI YPPLQSPSIA SPHPYASLAN WQMGRPPVVP GSYIPGSYTP MMLSSGMIPL  240
QGWSPYPASV NPVVSGGAQQ NVQAGPVYGM GHHGSSSTIA YGGPYVPYAS STGQSSNNQQ  300
EHGFPERPGQ PDCQYYMRTG DCKFGATCKY HHPRELSAPK SGYMVNSLCL PLRPGAQPCA  360
YYAQNGYCRY GVACKYDHPM GTLGYSPSAL PLSDMPIAPY PIGFSIATLA PSSPSPDLRP  420
EYISTKDQSV SQVTSPVAAS EPAGSILPKG VFPADTMMRA QTNTTSGGSS SPGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-125	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G12470.1