PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G12470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 476aa    MW: 49779.7 Da    PI: 7.597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G12470.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.9e-116086127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++e C +++rtG C +GdrC+++H++
  ONIVA01G12470.1 60 PGEEDCVYYLRTGACGFGDRCRYNHPR 86
                     5899*********************96 PP

2zf-CCCH37.83.1e-12111135327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tGtCk+G +Ck++H++
  ONIVA01G12470.1 111 QPICEYYMKTGTCKFGTNCKYHHPK 135
                      799********************96 PP

3zf-CCCH38.81.6e-12156180327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tG+Ck+G +CkF+H++
  ONIVA01G12470.1 156 EKECSYYMKTGQCKFGTTCKFHHPE 180
                      689********************96 PP

4zf-CCCH38.32.2e-12308334127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++++rtG Ck+G++Ck++H++
  ONIVA01G12470.1 308 PGQPDCQYYMRTGDCKFGATCKYHHPR 334
                      5789*********************96 PP

5zf-CCCH322.2e-10357380427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C ++a++G+C+yG  Ck+ H++
  ONIVA01G12470.1 357 QPCAYYAQNGYCRYGVACKYDHPM 380
                      69********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MEQPHAAAAA AGGGEGEGGA SPDTGLEGPM WRMGLGGGGG GGGGGGGGDG DAAGRLPERP  60
GEEDCVYYLR TGACGFGDRC RYNHPRDRGG TEFGGGARNA AALDYPERAG QPICEYYMKT  120
GTCKFGTNCK YHHPKQDGAV LPVMLNNSGF PIRLGEKECS YYMKTGQCKF GTTCKFHHPE  180
FGGVPMTPGI YPPLQSPSIA SPHPYASLAN WQMGRPPVVP GSYIPGSYTP MMLSSGMIPL  240
QGWSPYPASV NPVVSGGAQQ NVQAGPVYGM GHHGSSSTIA YGGPYVPYAS STGQSSNNQQ  300
EHGFPERPGQ PDCQYYMRTG DCKFGATCKY HHPRELSAPK SGYMVNSLCL PLRPGAQPCA  360
YYAQNGYCRY GVACKYDHPM GTLGYSPSAL PLSDMPIAPY PIGFSIATLA PSSPSPDLRP  420
EYISTKDQSV SQVTSPVAAS EPAGSILPKG VFPADTMMRA QTNTTSGGSS SPGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-125C3H family protein