PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G12440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 468aa MW: 49203.2 Da PI: 7.9939 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 1.9e-10 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+++H++ ONIVA01G12440.1 54 PGEADCVYYLRTGACGYGENCRYNHPR 80 57899********************96 PP | |||||||
2 | zf-CCCH | 37.3 | 4.7e-12 | 104 | 130 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++++GtCk+G++Ck+ H++ ONIVA01G12440.1 104 PGQPVCEYYMKNGTCKFGSNCKYDHPR 130 5789*********************96 PP | |||||||
3 | zf-CCCH | 33.4 | 7.6e-11 | 149 | 174 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +tG+Ck+G++CkF+H++ ONIVA01G12440.1 149 GEKDCTYYVKTGHCKFGSTCKFHHPE 174 5789********************96 PP | |||||||
4 | zf-CCCH | 37.3 | 4.6e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ Ck++H++ ONIVA01G12440.1 302 PGQPECQYYLKTGSCKFGSACKYHHPQ 328 5789*********************97 PP | |||||||
5 | zf-CCCH | 28.6 | 2.4e-09 | 350 | 374 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++ + G+Ck+G++CkF H++ ONIVA01G12440.1 350 SQPCAYYTQHGFCKFGPTCKFDHPM 374 679********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence |
MEPYAAAEGG GGGGGGGGGS TDTGLEESMW RMGLGGGGGG GGEAVAAGRL PERPGEADCV 60 YYLRTGACGY GENCRYNHPR DRAAAAVLNG GGKTTHSAEY PERPGQPVCE YYMKNGTCKF 120 GSNCKYDHPR EGSVQAVMLN SSGYPLRSGE KDCTYYVKTG HCKFGSTCKF HHPEIGGVSE 180 TPNMYPPVQP QPISSSHPYQ HLAGWQMGRP PVLPGSFLSG SYPPMMLPST VVPMQGWNPY 240 ISPVNQVASA GGHQTVQAGP FYGLSHQGPS AAVTYGSQYA PLSSSTMPSS SSKQEPAFPA 300 RPGQPECQYY LKTGSCKFGS ACKYHHPQYL NTPKSNCMLS PLGLPLRPGS QPCAYYTQHG 360 FCKFGPTCKF DHPMGTLSYS PSASSITDLP IAPYPLNYAV APVAPPSSSS DLRPEYLLTK 420 EFSANQSASP GTTCGPAGAM LKAYAPHMLI RPQTSGAGGM VTTHGGEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-115 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G12440.1 |