PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G12440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 468aa    MW: 49203.2 Da    PI: 7.9939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G12440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-105480127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C yG++C+++H++
  ONIVA01G12440.1 54 PGEADCVYYLRTGACGYGENCRYNHPR 80
                     57899********************96 PP

2zf-CCCH37.34.7e-12104130127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++++GtCk+G++Ck+ H++
  ONIVA01G12440.1 104 PGQPVCEYYMKNGTCKFGSNCKYDHPR 130
                      5789*********************96 PP

3zf-CCCH33.47.6e-11149174227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ +tG+Ck+G++CkF+H++
  ONIVA01G12440.1 149 GEKDCTYYVKTGHCKFGSTCKFHHPE 174
                      5789********************96 PP

4zf-CCCH37.34.6e-12302328127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ Ck++H++
  ONIVA01G12440.1 302 PGQPECQYYLKTGSCKFGSACKYHHPQ 328
                      5789*********************97 PP

5zf-CCCH28.62.4e-09350374327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C ++ + G+Ck+G++CkF H++
  ONIVA01G12440.1 350 SQPCAYYTQHGFCKFGPTCKFDHPM 374
                      679********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MEPYAAAEGG GGGGGGGGGS TDTGLEESMW RMGLGGGGGG GGEAVAAGRL PERPGEADCV  60
YYLRTGACGY GENCRYNHPR DRAAAAVLNG GGKTTHSAEY PERPGQPVCE YYMKNGTCKF  120
GSNCKYDHPR EGSVQAVMLN SSGYPLRSGE KDCTYYVKTG HCKFGSTCKF HHPEIGGVSE  180
TPNMYPPVQP QPISSSHPYQ HLAGWQMGRP PVLPGSFLSG SYPPMMLPST VVPMQGWNPY  240
ISPVNQVASA GGHQTVQAGP FYGLSHQGPS AAVTYGSQYA PLSSSTMPSS SSKQEPAFPA  300
RPGQPECQYY LKTGSCKFGS ACKYHHPQYL NTPKSNCMLS PLGLPLRPGS QPCAYYTQHG  360
FCKFGPTCKF DHPMGTLSYS PSASSITDLP IAPYPLNYAV APVAPPSSSS DLRPEYLLTK  420
EFSANQSASP GTTCGPAGAM LKAYAPHMLI RPQTSGAGGM VTTHGGEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-115C3H family protein