PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G09240.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 604aa MW: 65560.7 Da PI: 4.3678

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G09240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.7	3e-13	13	49	3	39
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +++++ r +tf kRrng++K A+ LS+L++a vav+i ONIVA01G09240.1 13 VDDERERDITFFKRRNGLFKCASDLSILTGASVAVVI 49 578999*****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MPRRARRTGA AYVDDERERD ITFFKRRNGL FKCASDLSIL TGASVAVVIE DQNRSKFHAV 60 GTPTVQAVVD AALSSDVEEA AAEARPVADE QLMERIAPLE RELAWLKGEA AEKDETTKAS 120 KARFKMAQKK EENEEEGDTK KKKLFFSKPD KLSSDEMNEL LAEMLEIKKE LNVRLPPLRR 180 RGGKRPIQGS SVPPPPPPPP PPPQPEQQLQ LPQWPNLSGP HNQLLPVAPP PFVADQPPPP 240 PPPAAGGSLW IPELPPPPVE GSPWAGLLPL RPPRFAGMEP SFLESQQAPP PAQVSTQLAP 300 LPLIREEAPL LQEPFLFADQ APVLAPLPAP LQMPVAETHL PLQAPLLQEP FLFSDHAPTL 360 APLPSPLQMP VAETHLPLQV QAPFMQEPFL FSDQAPVLAP PPTPLQMPVE AHMPLEAPWI 420 QEPFLMPDQA PVHAPPPTPL LMPVGADHFP LEAPLFQESL IMADQKSVHA LPPPPLQMPL 480 EAHLPPAAQE YNQDLAVQQQ PQEYENYDYM FENVGLSQAQ PVAAGAGDAG FAAIGNDDNP 540 FGYQQLVASP LYDGQIYFGS GVDNMGVPPA GDFGGVPEAA LPEVEHASSS GWGNNITGDA 600 GAWF

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MPRRARRTGA AYVDDERERD ITFFKRRNGL FKCASDLSIL TGASVAVVIE DQNRSKFHAV  60
GTPTVQAVVD AALSSDVEEA AAEARPVADE QLMERIAPLE RELAWLKGEA AEKDETTKAS  120
KARFKMAQKK EENEEEGDTK KKKLFFSKPD KLSSDEMNEL LAEMLEIKKE LNVRLPPLRR  180
RGGKRPIQGS SVPPPPPPPP PPPQPEQQLQ LPQWPNLSGP HNQLLPVAPP PFVADQPPPP  240
PPPAAGGSLW IPELPPPPVE GSPWAGLLPL RPPRFAGMEP SFLESQQAPP PAQVSTQLAP  300
LPLIREEAPL LQEPFLFADQ APVLAPLPAP LQMPVAETHL PLQAPLLQEP FLFSDHAPTL  360
APLPSPLQMP VAETHLPLQV QAPFMQEPFL FSDQAPVLAP PPTPLQMPVE AHMPLEAPWI  420
QEPFLMPDQA PVHAPPPTPL LMPVGADHFP LEAPLFQESL IMADQKSVHA LPPPPLQMPL  480
EAHLPPAAQE YNQDLAVQQQ PQEYENYDYM FENVGLSQAQ PVAAGAGDAG FAAIGNDDNP  540
FGYQQLVASP LYDGQIYFGS GVDNMGVPPA GDFGGVPEAA LPEVEHASSS GWGNNITGDA  600
GAWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-08	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G09240.1