PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06840.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 306aa    MW: 32802.2 Da    PI: 10.1535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.7e-15121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  ONIVA01G06840.1 121 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 165
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MARKCSSCGN NGHNSRTCTG QRRLQESGGG GAGGVRLFGV QLHVGGAPLK KCFSMECLSS  60
PSPSPSPAYY AAVAAAASNS SPTVSSSSSL VSVEEAGEKM ANGYLSDGLM ARAQERKKGV  120
PWTEEEHRKF LVGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS  180
LFDVIEDAEK APSVNERLKL RHETTSVPAE MGFPALSLGI SSMAQPEAML LPPPSLTLTP  240
SCSSPAVSSS SSEQPRTIHP SLMVAKPQVQ LQLQPPDLEL KISTVRQNDQ PSSSPRTPFL  300
GTIRVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-49MYB_related family protein