PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G05440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 602aa    MW: 66202.9 Da    PI: 7.4959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G05440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-065681126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+ C +f  +G C + d C+FaHg
  ONIVA01G05440.1 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81
                     9************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MAGRGGMEWE VGRRRDSEDV IVLSPGPPAR RRPPPVKAVE PDPGGFAYEP PEKLFYKTRV  60
CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ  120
VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS  180
SWEMPARRSV AVTVPRTFVS VPPVAPPPPH YRVNNNSSSS SRYNAASMAA AAPPAASDAN  240
LVAQQPPPEQ GGRKMTRLEM LSLKKMTGIY GDWLEGAIEH YLNAGVVSIK LWMNRFDYRG  300
LMQPFDGICE IPIIKLRPYQ LNYYNQEAVG KGQHRWGKWF DLSIAQEKLV NSTGGSTASS  360
SHLVYPSKSK RLSWHPRIFL YEGFLSDMEC DHLVSTGRGN MDSSLAFTDG DRNSSYNNIE  420
DIVVSKIEDR ISLWSFLPKE NGENIQVLKY GVNRRGSIKE EPKSSTGGHW LATILIYLSD  480
VKQGGETVFP RSEMKDAQAK EGAPSQCSGY AVRPAKGNAL LLFNLRPDGE IDKDSQYEEC  540
PVLEGEKWLA IKHIHLRKLD SPKSSLASED ECTDEDDRCV SWAASGLSNL ILSAYNHEKI  600
IT