PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G20570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 395aa MW: 41229.4 Da PI: 7.9291

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G20570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.5	1e-33	144	283	1	112
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasn 84 aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++ ss+++ + +++++s++++ OGLUM12G20570.1 144 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLdcsfalpaaaSSPPP-PAADDAEVSTSET 236 6899***************************************************************9999877533333.2233333333333 PP TCP 85 sssg...................kaaksaakskksqksaasalnlak 112 s+s+ ++++++ sk+ q++++++l++ + OGLUM12G20570.1 237 SKSSvlslanapcdngggafaelLHCSNTNGSKPLQQQQQATLAYYA 283 33336777788888999999999555555533333333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MVLCAGHIHE VWNIRGLFCK IELLSSACAE AIRPASSSSS CSCSLQGAQL TASERFRVAQ 60 SELLLVGPSN SGASSPGSSV SIDPLQTKRR RISHELAQAS AMEEVGGGGK ERKRPRGSLV 120 GVSGGGASAA TAAAWRTSRV ARAAAGGKDR HSKVVTSRGL RDRRVRLSVP TAIAFYDIQD 180 RLGVDQPSKA IEWLIRAAAA AIDALPSLDC SFALPAAASS PPPPAADDAE VSTSETSKSS 240 VLSLANAPCD NGGGAFAELL HCSNTNGSKP LQQQQQATLA YYAAAQSAHM AAPMSFEMMA 300 MPPHLAFSQE QQQHATVAAF DRGTLQSNAS LWPPPPPPPS QHPFLLQRFA AAPAEVAGLP 360 RRWRRCCSGG DDQWGGAEAA ALGLQGGEED MTKDA

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MVLCAGHIHE VWNIRGLFCK IELLSSACAE AIRPASSSSS CSCSLQGAQL TASERFRVAQ  60
SELLLVGPSN SGASSPGSSV SIDPLQTKRR RISHELAQAS AMEEVGGGGK ERKRPRGSLV  120
GVSGGGASAA TAAAWRTSRV ARAAAGGKDR HSKVVTSRGL RDRRVRLSVP TAIAFYDIQD  180
RLGVDQPSKA IEWLIRAAAA AIDALPSLDC SFALPAAASS PPPPAADDAE VSTSETSKSS  240
VLSLANAPCD NGGGAFAELL HCSNTNGSKP LQQQQQATLA YYAAAQSAHM AAPMSFEMMA  300
MPPHLAFSQE QQQHATVAAF DRGTLQSNAS LWPPPPPPPS QHPFLLQRFA AAPAEVAGLP  360
RRWRRCCSGG DDQWGGAEAA ALGLQGGEED MTKDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-19	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G20570.1