PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20290.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 294aa    MW: 31776.4 Da    PI: 10.5784
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.3e-32185241158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e+ekkl  k+rkpylheSRh+hAl+R+Rg gGrF
  OGLUM12G20290.1 185 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRKPYLHESRHQHALKRARGAGGRF 241
                      69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MAQITRAPPL SFSETNPKKI KTKKINSSPL LISSPSPLLS PSPSPSPSPS PPLAAGGDRV  60
RRDRLAGRVP SPSRTSARLA SSSRKCGNHG ADERQKQQRQ GEPEDQQEAS VTSTDSHTMV  120
ATPSTDYATP YAHHDMAHAM GQIAYANIDP YYGSLYAAYG GQPMMHPPLV GMHPAGLPLP  180
TNAIEEPVYV NAKQYNAILR RRQSRAKAES EKKLVKGRKP YLHESRHQHA LKRARGAGGR  240
FLNSKSDDKE EHSDSSSRDK QDGVAPRDSG QPSTSPSSKG ASSAKQNKKS KTSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-37NF-YA family protein