PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G20170.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 152aa MW: 16012.8 Da PI: 8.4389 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.7 | 4.4e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsV+Ca+C++V OGLUM12G20170.2 7 CHGCRNILLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 48.7 | 1.3e-15 | 47 | 71 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A+sVRC++CdtV OGLUM12G20170.2 47 CGGCRTLLMYTRNATSVRCSCCDTV 71 ************************9 PP | |||||||
3 | zf-LSD1 | 51.2 | 2.1e-16 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ OGLUM12G20170.2 85 CGQCQTVLMYPYGAPSVKCAICNFI 109 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence |
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA 60 TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGPTIQSQN 120 VTVVVENPMT VDAKGKLVSN VVVGVTTGGK KY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-49 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM12G20170.2 |