PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 173aa    MW: 18257.3 Da    PI: 8.5475
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20170.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.55.3e-14731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGApsV+Ca+C++V
  OGLUM12G20170.1  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                     ************************9 PP

2zf-LSD148.41.5e-154771125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y+r+A+sVRC++CdtV
  OGLUM12G20170.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
                     ************************9 PP

3zf-LSD150.92.5e-1685109125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+t+L+YP+GApsV+Ca+C+++
  OGLUM12G20170.1  85 CGQCQTVLMYPYGAPSVKCAICNFI 109
                      ***********************86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA  60
TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL  120
PPNGTSYTVP STSAPTIQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGG KKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.22e-51LSD family protein