PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 444aa MW: 49643.2 Da PI: 6.6433

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.6	5.8e-14	137	174	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC Cfa+g++Cse+C C+ C Nk+ OGLUM12G19870.1 137 CKSCSCKKSKCLKLYCVCFASGSHCSESCGCDPCYNKS 174 89**********************************97 PP
2	TCR	46.1	9.4e-15	213	248	4	39
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN OGLUM12G19870.1 213 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 248 79*********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MASSGDPSAV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRSWT GTIIGPHNTV 60 HEGRIYQLKL FCDKDYPDRP PTVKFHSRIN MTCVNPENGL WYYAGSFSGI ASLNLLFVLS 120 SDYHVALTRK TDEGEGCKSC SCKKSKCLKL YCVCFASGSH CSESCGCDPC YNKSIHGVPR 180 STPALPLKAV QTLETGQDSV EQLIRSPMDF GRRKCTCKKS GCLKKYCDCY QGGAGCSINC 240 KCDDCKNPYG RKVGVILDGK NILAGPTPNE RNGTEADSSD DEEDDYYMNR PLSPVSPSPV 300 SRESSFQQET LVGVEVQTMN GHLYPKPLTQ VRPESWQLTR RPTEEVRGEA WHYLRRPSED 360 GTSDVMEGHA DPKFQRDNKQ LENHVDRYSI PRCIEVMNAM ADLSPIEKSL APDVFLDPSN 420 REIFLSLTVD IRTMWLKRKM KSLV

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MASSGDPSAV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRSWT GTIIGPHNTV  60
HEGRIYQLKL FCDKDYPDRP PTVKFHSRIN MTCVNPENGL WYYAGSFSGI ASLNLLFVLS  120
SDYHVALTRK TDEGEGCKSC SCKKSKCLKL YCVCFASGSH CSESCGCDPC YNKSIHGVPR  180
STPALPLKAV QTLETGQDSV EQLIRSPMDF GRRKCTCKKS GCLKKYCDCY QGGAGCSINC  240
KCDDCKNPYG RKVGVILDGK NILAGPTPNE RNGTEADSSD DEEDDYYMNR PLSPVSPSPV  300
SRESSFQQET LVGVEVQTMN GHLYPKPLTQ VRPESWQLTR RPTEEVRGEA WHYLRRPSED  360
GTSDVMEGHA DPKFQRDNKQ LENHVDRYSI PRCIEVMNAM ADLSPIEKSL APDVFLDPSN  420
REIFLSLTVD IRTMWLKRKM KSLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-24	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19870.1