PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19530.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 298aa    MW: 31130.7 Da    PI: 10.1516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.1e-14122168455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  OGLUM12G19530.1 122 AHNLTEKRRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 168
                      8*************************9.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MGTTTTTLLP EQPLVDDHHL PAAAAAAAAA PPSEEEMAAW LYPIVSGHEV AGGEWRSPEA  60
QDDRRAAPAP EKKQMEKMPA AASPTTTMNK DETSDDSGER KKKKASSAAG KASKHHHAAA  120
GAHNLTEKRR RFKITERFRT LQRLVPGCDK SNQASTLDQT IQYMKSLQHQ LKAMSVVGSL  180
PALLYPAAVH PQSYMHPPPA PPSVAGAAPP VTMPMHPGMV LAAPPPGAAP PPGPPAMVPF  240
GAMLPYPPYP AVLLPPPAAA TLYGRPPAAA PGVAARRHGS SGGGRISKSS SSSLCKKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132EKRRRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-14bHLH family protein