PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19470.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 458aa MW: 48723.2 Da PI: 10.4597

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19470.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.1e-31	392	449	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ OGLUM12G19470.2 392 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 449 9***********************988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MSRSPARRPA QVSELAELEL LLFFFFFFFF FSGDEFDAFL DGRPVAAMGR GAPLVVAAAT 60 MGRRSGRRNQ GRPPSEELRE SEASLAGLAP AAAAAAAMEE EVEAANRAAV ESCHRVLALL 120 SQQQDPALLR SIASETGEAC AKFRKVVSLL GNGGGGGGGG GGHARGRMAG RSRPSAVLRE 180 KGFLESSSGG GQLGMMMSGA ATPSTSSAAH LRNRIGGGGG VPPDSLRGLD LVSSSSKGGA 240 HQFDPPKLVQ PLSVQFQFGA TAHRYPFQQH QHQQKLQAEM FKRSNSGISL KFDSPSATGT 300 MSSAFMSSLS MDGSVASLEG KPPFHLISGP VASDPVNAHH APKRRCTGRG EDGSGKCATT 360 GRCHCSKRRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSVR 420 GCPARKHVER CVDDPAMLIV TYEGEHNHTR LPTQSAQT

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MSRSPARRPA QVSELAELEL LLFFFFFFFF FSGDEFDAFL DGRPVAAMGR GAPLVVAAAT  60
MGRRSGRRNQ GRPPSEELRE SEASLAGLAP AAAAAAAMEE EVEAANRAAV ESCHRVLALL  120
SQQQDPALLR SIASETGEAC AKFRKVVSLL GNGGGGGGGG GGHARGRMAG RSRPSAVLRE  180
KGFLESSSGG GQLGMMMSGA ATPSTSSAAH LRNRIGGGGG VPPDSLRGLD LVSSSSKGGA  240
HQFDPPKLVQ PLSVQFQFGA TAHRYPFQQH QHQQKLQAEM FKRSNSGISL KFDSPSATGT  300
MSSAFMSSLS MDGSVASLEG KPPFHLISGP VASDPVNAHH APKRRCTGRG EDGSGKCATT  360
GRCHCSKRRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSVR  420
GCPARKHVER CVDDPAMLIV TYEGEHNHTR LPTQSAQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-71	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19470.2